Nd Blots for GH54, FH4, and GH19 are shown in A

Nd Blots for GH54, FH4, and GH19 are shown in A, B, and C, respectively. For each mutant the SDS-gel is shown on the left, while the respective blots are shown on the right, on top against subunit a, and at the bottom against subunit c. Samples are shown untreated, after oxidation with 400 mM DTNB, after reduction with 10 mM DTT, and re-reduced (after UKI-1 web previous oxidation) with 30 mM DTT. The samples were incubated overnight with the respective chemical. doi:10.1371/journal.pone.0053754.gtheoretical figures to the uncertainty of determining the a-bands intensities. Oxidizing conditions in the rotation assay (see below) differed from those used for SDS-gels and bulk activity tests, i.e. the incubation time was only a few minutes instead of hours. To compensate for shorter incubation times we used higher concentrations of DTNB. To check whether these conditions affected the ability of the mutants to form cross-links we performed SDSPAGE analysis under rotation assay conditions, i.e. oxidation and re-reduction of samples was achieved by incubation with 4? mMUnfolding of Subunit Gamma in Rotary F-ATPaseDTNB and 20 mM DTT for 12 minutes, respectively. Figure 3 shows the gel for the mutant GH54. The high molecular ac-band appeared under oxidizing conditions, while the monomeric cband was only visible under reducing conditions. The lane with untreated sample showed all bands due to partial oxidation by atmospheric oxygen. This result confirmed that cross-links were formed quantitatively in the rotation assay.ATP Triptorelin custom synthesis hydrolysis activity in bulk solutionThe bulk ATPase hydrolysis activity was discerned colorimetrically from the concentration of released phosphate. Table 1 summarizes the activities of the six double cysteine mutants, and for comparison of the wild type KH7. The data from different stocks of mutant EF1 were standardized by comparison of the respective activity data with those of the wild type enzyme KH7 directly after protein purification. In the reduced state the double cysteine substitution alone, without formation of a disulfide bridge, can reduce the hydrolysis rate up to fourfold. The oxidation of the engineered cysteines with concomitant formation of a disulfide bridge between rotor and stator reduces the activity further. This reduction was gradual for the first four mutants (MM10, GH54, FH4, and GH19) and practically total when the cross-link was placed in the middle (PP2) or at the bottom (SW3) of subunit c. In addition, we checked for the reversibility of disulfide bridge formation. The activity of oxidized samples was restored after incubation for two hours with 20 M DTT.Rotation assay with single moleculesAccording to the results from bulk measurements the most interesting mutants in terms of rotation of the fixed C-terminal end of subunit c in the oxidized state were GH54 and FH4, while the cross-link activity of GH19 was the lowest of the three new mutants (Tab. 1). Therefore, we extended our research on the former two mutants by recording the rotation of single moleculesof subunit c relative to the immobilized (ab)3 as previously for MM10 [17,19]. The (ab)3c-complex was bound via Histidine6tags in each b-subunit to a Ni-NTA-HRP modified cover slip. A short biotinylated, fluorescent actin filament (length 0.4? mm) was attached to subunit c (c109C, c213C) via a cysteine-biotinstreptavidin-biotin-link to visualize its rotational movement. After addition of 5 mM ATP under reducing conditions up to 5 of the filaments started.Nd Blots for GH54, FH4, and GH19 are shown in A, B, and C, respectively. For each mutant the SDS-gel is shown on the left, while the respective blots are shown on the right, on top against subunit a, and at the bottom against subunit c. Samples are shown untreated, after oxidation with 400 mM DTNB, after reduction with 10 mM DTT, and re-reduced (after previous oxidation) with 30 mM DTT. The samples were incubated overnight with the respective chemical. doi:10.1371/journal.pone.0053754.gtheoretical figures to the uncertainty of determining the a-bands intensities. Oxidizing conditions in the rotation assay (see below) differed from those used for SDS-gels and bulk activity tests, i.e. the incubation time was only a few minutes instead of hours. To compensate for shorter incubation times we used higher concentrations of DTNB. To check whether these conditions affected the ability of the mutants to form cross-links we performed SDSPAGE analysis under rotation assay conditions, i.e. oxidation and re-reduction of samples was achieved by incubation with 4? mMUnfolding of Subunit Gamma in Rotary F-ATPaseDTNB and 20 mM DTT for 12 minutes, respectively. Figure 3 shows the gel for the mutant GH54. The high molecular ac-band appeared under oxidizing conditions, while the monomeric cband was only visible under reducing conditions. The lane with untreated sample showed all bands due to partial oxidation by atmospheric oxygen. This result confirmed that cross-links were formed quantitatively in the rotation assay.ATP hydrolysis activity in bulk solutionThe bulk ATPase hydrolysis activity was discerned colorimetrically from the concentration of released phosphate. Table 1 summarizes the activities of the six double cysteine mutants, and for comparison of the wild type KH7. The data from different stocks of mutant EF1 were standardized by comparison of the respective activity data with those of the wild type enzyme KH7 directly after protein purification. In the reduced state the double cysteine substitution alone, without formation of a disulfide bridge, can reduce the hydrolysis rate up to fourfold. The oxidation of the engineered cysteines with concomitant formation of a disulfide bridge between rotor and stator reduces the activity further. This reduction was gradual for the first four mutants (MM10, GH54, FH4, and GH19) and practically total when the cross-link was placed in the middle (PP2) or at the bottom (SW3) of subunit c. In addition, we checked for the reversibility of disulfide bridge formation. The activity of oxidized samples was restored after incubation for two hours with 20 M DTT.Rotation assay with single moleculesAccording to the results from bulk measurements the most interesting mutants in terms of rotation of the fixed C-terminal end of subunit c in the oxidized state were GH54 and FH4, while the cross-link activity of GH19 was the lowest of the three new mutants (Tab. 1). Therefore, we extended our research on the former two mutants by recording the rotation of single moleculesof subunit c relative to the immobilized (ab)3 as previously for MM10 [17,19]. The (ab)3c-complex was bound via Histidine6tags in each b-subunit to a Ni-NTA-HRP modified cover slip. A short biotinylated, fluorescent actin filament (length 0.4? mm) was attached to subunit c (c109C, c213C) via a cysteine-biotinstreptavidin-biotin-link to visualize its rotational movement. After addition of 5 mM ATP under reducing conditions up to 5 of the filaments started.